Transcriptional Analysis of the B-Cell Germinal Center Reaction

 

Klein, U., Y. Tu, G.A. Stolovitzky, J.L. Keller, J. Haddad, Jr., V. Miljkovic, G. Cattoretti, A. Califano, and R. Dalla-Favera.

 

Proc. Acad. Natl. Sci. U. S. A. 100:2639-2644, 2003

 

 

This web site contains the primary Affymetrix U95A gene chip hybridization data used in the above analysis in two forms:

 

1.)  Affymetrix CEL files.

 

2.)    The “average differences” / “signals” and the A, M or P calls of the respective samples as obtained by analyzing CEL files using Microsoft Analysis Suite (MAS) 5.0 with standard parameters and TGT=2,500. Of note, the “average differences” used for the analysis described in the present manuscript were obtained with MAS4.0 (TGT=2,500); we here chose to deposit primary data analyzed with MAS5.0 to allow future comparisons. The respective “signals” of the probe sets are ordered as in the Affymetrix CHP file; of note, the “spike control” probe set values are omitted.

 

The decompression program is available at http://www.winzip.com